Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs12131239 | chr1:103065430 | T/G | 0 | 215 | 9.07 | 11.07 | 2.07 | KM Plot |
| BLCA | rs12133052 | chr1:103116495 | C/T | 0 | 211 | 9.27 | 13.1 | 2.07 | KM Plot |
| BLCA | rs12221525 | chr11:3686944 | C/G | 7.6E-6 | 216 | 10.1 | 6.63 | 4.07 | KM Plot |
| BLCA | rs12253199 | chr10:74929392 | A/T | 3.35E-10 | 210 | 10.1 | 9.27 | 1.4 | KM Plot |
| BLCA | rs12260118 | chr10:116716464 | A/T | 0 | 216 | 2.07 | 6.97 | 9.47 | KM Plot |
| BLCA | rs12269727 | chr11:65086145 | C/T | 8.42E-14 | 215 | 9.03 | 12.4 | 2.17 | KM Plot |
| BLCA | rs12352 | chr18:5243083 | C/T | 4.8E-8 | 214 | 9.08 | 12.57 | 4.73 | KM Plot |
| BLCA | rs12359711 | chr10:126554668 | C/T | 1.51E-5 | 216 | 6.37 | 13.22 | 8.47 | KM Plot |
| BLCA | rs12502502 | chr4:70062750 | C/T | 5.66E-8 | 216 | 8.4 | 13.92 | 1.83 | KM Plot |
| BLCA | rs12535629 | chr7:100451732 | C/T | 1.92E-5 | 213 | 11.7 | 9.47 | 4.2 | KM Plot |
| BLCA | rs12569470 | chr10:74995827 | C/T | 2.19E-10 | 216 | 10.12 | 9.27 | 1.05 | KM Plot |
| BLCA | rs12621359 | chr2:217293824 | C/G | 1.59E-10 | 216 | 0.67 | 15.88 | 8.7 | KM Plot |
| BLCA | rs12794623 | chr11:65029437 | C/A | 3.64E-5 | 211 | 9.78 | 8.2 | 0.5 | KM Plot |
| BLCA | rs12923023 | chr16:11703682 | T/C | 7.19E-5 | 206 | 4.73 | 11.7 | 9.27 | KM Plot |
| BLCA | rs13327359 | chr3:151123152 | A/C | 0.000156 | 216 | 8.7 | 15.07 | 5.12 | KM Plot |